--------------------------------------------
MMTx uses the following third party software
--------------------------------------------

---------------------------------------------
Sleepycat Software: Berkeley DB Java Edition 
---------------------------------------------

Berkeley DB JE is a high performance, transactional storage engine 
written entirely in Java. Like the highly successful Berkeley DB product, 
Berkeley DB JE executes in the address space of the application, without 
the overhead of client/server communication. It stores data in the 
application's native format, so no runtime data translation is required. 
Berkeley DB JE supports full ACID transactions and recovery. 
It provides an easy-to-use interface, allowing programmers to store 
and retrieve information quickly, simply and reliably.

Berkely DB JE can be retrieved from http://sleepycat.com
  
   Copyright (c) 2002-2004
  	Sleepycat Software.  All rights reserved.
  
   Redistribution and use in source and binary forms, with or without
   modification, are permitted provided that the following conditions
   are met:
   1. Redistributions of source code must retain the above copyright
      notice, this list of conditions and the following disclaimer.
   2. Redistributions in binary form must reproduce the above copyright
      notice, this list of conditions and the following disclaimer in the
      documentation and/or other materials provided with the distribution.
   3. Redistributions in any form must be accompanied by information on
      how to obtain complete source code for the DB software and any
      accompanying software that uses the DB software.  The source code
      must either be included in the distribution or be available for no
      more than the cost of distribution plus a nominal fee, and must be
      freely redistributable under reasonable conditions.  For an
      executable file, complete source code means the source code for all
      modules it contains.  It does not include source code for modules or
      files that typically accompany the major components of the operating
      system on which the executable file runs.
  
   THIS SOFTWARE IS PROVIDED BY SLEEPYCAT SOFTWARE ``AS IS'' AND ANY EXPRESS
   OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
   WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, OR
   NON-INFRINGEMENT, ARE DISCLAIMED.  IN NO EVENT SHALL SLEEPYCAT SOFTWARE
   BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
   CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
   SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
   INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
   CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
   ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF
   THE POSSIBILITY OF SUCH DAMAGE.
   
---------------------------------------------------------------
MedPostSKR
---------------------------------------------------------------

MMTx uses a modified version of Larry Smith's MedPost Part of Speech Tagger.
More specifically, MMTx uses a java implementation of the trained 
component of MedPost with changes made to address tokenization
differences between MetaMap and MedPost. For details on MedPost see
See http://bioinformatics.oupjournals.org/cgi/content/abstract/20/14/2320 

MedPost can be picked up from 
ftp://ftp.ncbi.nlm.nih.gov/pub/lsmith/MedPost/medpost.tar.gz 

The MedPost Tagger contains the following notice:

                            PUBLIC DOMAIN NOTICE                          
               National Center for Biotechnology Information
                                                                          
  This software/database is a "United States Government Work" under the   
  terms of the United States Copyright Act.  It was written as part of    
  the authors' official duties as a United States Government employee and 
  thus cannot be copyrighted.  This software/database is freely available 
  to the public for use. The National Library of Medicine and the U.S.    
  Government have not placed any restriction on its use or reproduction.  
                                                                         
  Although all reasonable efforts have been taken to ensure the accuracy  
  and reliability of the software and data, the NLM and the U.S.          
  Government do not and cannot warrant the performance or results that    
  may be obtained by using this software or data. The NLM and the U.S.    
  Government disclaim all warranties, express or implied, including       
  warranties of performance, merchantability or fitness for any particular
  purpose.                                                                
                                                                          
  Please cite the authors in any work or product based on this material.   

---------------------------------------------------------------
Jakarta-ORO 2.0.6
---------------------------------------------------------------

The Jakarta-ORO Java classes are a set of text-processing Java classes
that provide Perl5 compatible regular expressions, ... This library is
the successor to the OROMatcher, AwkTools, PerlTools, and TextTools
libraries from ORO, Inc. (www.oroinc.com).  They have been donated to
the Jakarta Project by Daniel Savarese (www.savarese.org), the
copyright holder of the ORO libraries.  This software is endowed
the Apache Software License, Version 1.1. Copyright (c) 2000-2002 from
The Apache Software Foundation.  All rights reserved.


---------------------------------------------------------------
JUnit 3.8.1
---------------------------------------------------------------

JUnit is a regression testing framework written by Erich Gamma and Kent Bec
It is used by the developer who implements unit tests in Java.
JUnit is Open Source Software, released under the Common Public License
Version 1.0 and hosted on SourceForge.

---------------------------------------------------------------
Cygwin
---------------------------------------------------------------

Cygwin is a Linux-like environment for Windows. It consists of
two parts: A DLL (cygwin1.dll) which acts as a Linux API
emulation layer providing substantial Linux API functionality.
A collection of tools, which provide Linux look and feel.

This program is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License (GPL)
as published by the Free Software Foundation; either version 2 of
the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 59 Temple Place - Suite 330,
Boston, MA 02111-1307, USA.


---------------------------------------------------------------
SPECIALIST Lexical Tools (LVG)
---------------------------------------------------------------

The SPECIALIST lexical tools are a set of JAVA programs designed 
to help users manage lexical variation in biomedical text.
Terms and Conditions for Use of the SPECIALIST NLP Tools

The SPECIALIST Lexical tools use or (may use) the 
following third party software packages:

 - HSQL Database Engine (HSQLDB) from SourceForge
   (see http://hsqldb.sourceforge.net) 
   This package is covered under a SourceForge 
   License, which allows for redistribution
   and use with a "copyright notice". We have made no 
   changes to HSQLDB. 
             
 - The installation script uses some GNU CYGWIN 
   programs that have been distributed along with 
   this script. These commands are only used when 
   this installation is on a Windows platform.
   The commands that have been distributed 
   include tar, gunzip, rm, find, hosthame, 
   tee, and cmp. 
    
    
Use of the SPECIALIST NLP Tools

a. Redistributions of the SPECIALIST NLP Tools in source or 
   binary form must include this list of conditions in the 
   documentation and/or other materials provided with the distribution.
b. In any publication or distribution of all or any portion of the 
   SPECIALIST NLP Tools (1) you must attribute the source of the 
   tools as the SPECIALIST NLP Tools with the release number and date; 
   (2) you must state any modifications made to the SPECIALIST NLP Tools 
   along with a complete description of the modifications, which may be 
   in the form of patch files.
c. You shall not assert any proprietary rights to any portion of the 
   SPECIALIST NLP Tools, nor represent the SPECIALIST NLP Tools or any 
   part thereof to anyone as other than a United States Government product.
d. The name of the U.S. Department of Health and Human Services, 
   National Institutes of Health, National Library of Medicine, 
   Lister Hill National Center for Biomedical Communications may not be 
   used to endorse or promote products derived from the SPECIALIST NLP 
   Tools without specific prior written permission.
e. Neither the United States Government, U.S. Department of Health and 
   Human Services, National Institutes of Health, National Library of Medicine, 
   Lister Hill National Center for Biomedical Communications, nor any 
   of its agencies, contractors, subcontractors or employees of the 
   United States Government make any warranties, expressed or implied, 
   with respect to the SPECIALIST NLP Tools, and, furthermore, assume no 
   liability for any party's use, or the results of such use, of any part 
   of these tools.

These terms and conditions are in effect as long as the user retains any 
part of the SPECIALIST NLP Tools.